Arms 4,5,2 and 6 initialize the machine by giving an atom to arm 10 at a different hand depending on the input.
After that, the machine enters a 6 tape loop where arms 1,2 and 3 stabilize the input for a deterministic peeling.
Then the left chamber reconstructs a stabilized nucleon and flip it until arm 10 debonds one of the sides. 
The machine makes sure that all the inputs are flipped the same amount of times, so that arm 9 is holding the fire atom while outputing.